Princeton University Library Catalog

Data mining in proteomics : from standards to applications / edited by Michael Hamacher, Martin Eisenacher and Christian Stephan.

Format:
Book
Language:
English
Published/​Created:
New York, NY : Humana Press, c2011.
Description:
xii, 461 p. : ill. (some col.) ; 27 cm.
Series:
Bibliographic references:
Includes bibliographical references and index.
Contents:
Part I. Data Generation And Result Finding -- 1. Instruments and Methods in Proteomics / Katrin Marcus -- 2. In-Depth Protein Characterization by Mass Spectrometry / Martin Bluggel -- 3. Analysis of Phosphoproteomics Data / Christoph Schaab -- Part II. Databases -- 4. The Origin and Early Reception of Sequence Databases / Joel B. Hagen -- 5. Laboratory Data and Sample Management for Proteomics / Fredrik Levander -- 6. PRIDE and "Database on Demand" as Valuable Tools for Computational Proteomics / Lennart Martens -- 7. Analysing Proteomics Identifications in the Context of Functional and Structural Protein Annotation: Integrating Annotation Using PICR, DAS, and BioMart / Philip Jones -- 8. Tranche Distributed Repository and ProteomeCommons.org / Philip C. Andrews -- Part III. Standards -- 9. Data Standardization by the HUPO-PSI: How has the Community Benefitted? / Henning Hermjakob -- 10. mzIdentML: An Open Community-Built Standard Format for the Results of Proteomics Spectrum Identification Algorithms / Martin Eisenacher -- 11. Spectra, Chromatograms, Metadata: mzML-The Standard Data Format for Mass Spectrometer Output / Eric W. Deutsch -- 12. imzML: Imaging Mass Spectrometry Markup Language: A Common Data Format for Mass Spectrometry Imaging / Bernhard Spengler -- 13. Tandem Mass Spectrometry Spectral Libraries and Library Searching / Eric W. Deutsch -- Part IV. Processing And Interpretation Of Data -- 14. Inter-Lab Proteomics: Data Mining in Collaborative Projects on the Basis of the HUPO Brain Proteome Project's Pilot Studies / Christian Stephan -- 15. Data Management and Data Integration in the HUPO Plasma Proteome Project / Gilbert S. Omenn -- 16. Statistics in Experimental Design, Preprocessing, and Analysis of Proteomics Data / Klaus Jung -- 17. The Evolution of Protein Interaction Networks / Erich Bornberg-Bauer -- 18. Cytoscape: Software for Visualization and Analysis of Biological Networks / Bettina Warscheid -- 19. Text Mining for Systems Modeling / Sebastian Schmeier -- 20. Identification of Alternatively Spliced Transcripts Using a Proteomic Informatics Approach / Gilbert S. Omenn -- 21. Distributions of Ion Series in ETD and CID Spectra: Making a Comparison / Simon J. Hubbard -- Part V. Tools -- 22. Evaluation of Peak-Picking Algorithms for Protein Mass Spectrometry / Johannes Schuchhardt -- 23. OpenMS and TOPP: Open Source Software for LC-MS Data Analysis / Oliver Kohlbacher -- 24. LC/MS Data Processing for Label-Free Quantitative Analysis / Frederique Lisacek -- Part VI. Modelling And Systems Biology -- 25. Spectral Properties of Correlation Matrices - Towards Enhanced Spectral Clustering / Enrico Scalas -- 26. Standards Databases, and Modeling Tools in Systems Biolog / Michael Kohl -- 27. Modeling of Cellular Processes: Methods, Data, and Requirements / Hubert Bahl.
Subject(s):
ISBN:
  • 9781607619864
  • 1607619865
OCLC:
648933072
Related name:
RCP:
C - S