Princeton University Library Catalog

Computational biology of transcription factor binding / edited by Istvan Ladunga.

Format:
Book
Language:
English
Published/​Created:
New York, NY : Humana Press, 2010.
Description:
xi, 454 p. : ill. ; 26 cm.
Series:
Bibliographic references:
Includes bibliographical references and index
Contents:
1. An Overview of the Computational Analyses and Discovery of Transcription Factor Binding Sites / Istvan Ladunga -- 2. Components and Mechanisms of Regulation of Gene Expression / Erich Grotewold -- 3. Regulatory Regions in DNA: Promoters, Enhancers, Silencers, and Insulators / Jean-Jack M. Riethoven -- 4. Three-Dimensional Structures of DNA-Bound Transcriptional Regulators / Tahir H. Tahirov -- 5. Identificaton of Promoter Regions and Regulatory Sites / Asaf A. Salamov -- 6. Motif Discovery Using Expectation Maximization and Gibb's Sampling / Gary D. Stormo -- 7. Probabilistic Approaches to Transcription Factor Binding Sites Prediction / Ivo Grosse -- 8. The Motif Tool Assessment Platform (MTAP) for Sequence-Based Transcription Factor Binding Site Prediction Tools / Hesham Ali -- 9. Computational Analysis of ChIP-seq Data / Hongkai Ji -- 10. Probabilistic Peak Calling and Controlling False Discovery Rate Estimations in Transcription Factor Binding Site Mapping from ChIP-seq / Istvan Ladunga -- 11. Sequence Analysis of Chromatin Immunoprecipitation Data for Transcription Factors / Ernest Fraenkel -- 12. Inferring Protein-DNA Interaction Parameters from SELEX Experiments / Marko Djordjevic -- 13. Kernel-Based Identification of Regulatory Modules / Sebastian J. Schultheiss -- 14. Identification of Transcription Factor Binding Sites Derived from Transposable Element Sequences Using ChIP-seq / I. King Jordan -- 15. Target Gene Identification via Nuclear Receptor Binding Site Prediction / Gabor Varga -- 16. Computing Chromosome Conformation / Josee Dostie -- 17. Large-Scale Identification and Analysis of C-Proteins / Mikhail S. Gelfand -- 18. Evolution of cis-Regulatory Sequences in Drosophila / Saurabh Sinha -- 19. Regulating the Regulators: Modulators of Transcription Factor Activity / Sridhar Hannenhalli -- 20. Annotating the Regulatory Genome / Obi L. Griffith -- 21. Computational Identification of Plant Transcription Factors and the Construction of the PlantTFDB Database / Jingchu Luo -- 22. Practical Computational Methods for Regulatory Genomics: A cisGRN-Lexicon and cisGRN-Browser for Gene Regulatory Networks / Derek Aguiar -- 23. Reconstructing Transcriptional Regulatory Networks Using Three-Way Mutual Information and Bayesian Networks / Peter J. Woolf -- 24. Computational Methods for Analyzing Dynamic Regulatory Networks / Ziv Bar-Joseph.
ISBN:
  • 9781607618539
  • 1607618532
OCLC:
665172551
Related name:
RCP:
C - S